PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS06760 (521 amino acids)

SeqID: BPHYT_RS06760 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598786: probable hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS06760
MTSRNFSIETIGIVGTGAMGRGIAQIAALAGLTVRLYDTNPAAIGAARDYLAETFAKLTA
KGKLDQARSLAALANVSGAQSIGELAGCDLVVEAIVEKLDVKQALFRELETVVSGRCVLA
SNTSSLSITAIAAGCSDPSRVVGYHFFNPVPLMKVVEVIDGLRSDPAAGDALMNLARRMG
HTPVRAKDMPGFIVNHAGRGMNTEGLRVAGEGVASFADIDRIVREQAGFRLGPFELLDLT
ALDVSHPVMESIYHQFYEEPRFTPSPITGTRLAGGLIGRKTGEGFYRYEDGKQQVPAEAP
APTGLPAGVWVSKRYPQAHDAVVQLIEKAGVKLDDGATPAANSLIVVTPFGHDATTAAVD
EALDATRVVAIDALFPLVGAQRRTLMTTPATTRTARDTAHALFAADGVPVTVIRDSTGFV
AQRVVATIVNIGCDIAQKQIATPQDIDLAVTLGLGYPRGPLGLGDALGSTTILTILRNMF
SVLGDPRYRPSPWLARRAQLGMSLTQRDAADLETKTQETQQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory