PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS08325 (837 amino acids)

SeqID: BPHYT_RS08325 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118581: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Cytoplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS08325
MTSQSNSRGVIGVVTLLFTVLTALYLLIGGAWLLSVGGSAYYLITGVALLGVAWLLWRRS
PTALVLYSLVLIGTAIWALMESGPDFWALAPRSGVLVIFGVWLLLLVSWRLVGERKLGVV
SLVVALVAWAGVLVYASFNDPQQVNGTLSASAPASGAGAGSGIDPADWPAYGRTQEGTRY
SPLQQITPENVKDLQVAWTFRTGDMKGPNDPVEITDEVTPIKIGDLLYLCSPHQILFALD
AKTGTLKWKFDPRLKSDPSFQHVTCRGVSYVDLSAGATAAAPATAPASDATATAAAPASD
TATAAAPASDTATATTTAAPAATPASDTTATCTRRIYLPVNDGHLYALDALTGQRCEGFA
NHGDLDLQHAQPVTTAGMYEPTSPSIITSKVIIVAGSVEDNFSNREPSGVIRGFDVRTGE
LLWAFDPGAKDPNHIPGAGEHYTWNSPNSWAPAAYDAKLDIVYLPMGVTTPDIWGGNRTP
EQERYASGLLALNASTGKLAWFYQTAHHDLWDMDQPSQPTLADITGKDGQSVPVVYAPAK
TGNLFVLDRRTGVPVVPAPETPVPQGAAPGDHVSPTQPFSQLTYRPSKKLTDADMWGATM
YDQLVCRVMFHKLRYEGTFTPPSLQGTLVFPGNLGMFEWGGIAVDTDRQIAVANPIALPF
VSRLIPRGPGNPLEPVPGAKGSGTESGIQPQYGVPYGVVINAFLSPFGLPCKQPAWGYIS
AIDLKTNEIVWKKRIGTVRDSSPIPLPFRMGMPMLGGPIVTAGGVAFIGATADNYIRGFD
VNNGKQVWEARLPAGGQATPMSYSINGRQYLVIAAGGHGSFGTKLGDYVIAYALPQQ