PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS08720 (208 amino acids)

SeqID: BPHYT_RS08720 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [7 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027839: UPF0126 inner membrane protein yadS]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS08720
MRLNVETLVLAADLAGTVVFALEGALSAIHGGLDLLGVMVIAFVAALGGGVIRDLLIGDS
PPNAIRDWRYPALTFITGLLTFIFHSTAQQFPVALVTVLDAAGLALFAVAGVEKALLFGI
RPFIAMLMGTVTGVGGGVIRDVLLARVPLVLHADIYATAAFAGAFIVVVARRAGLPPGAA
ALAGGSACFVLRVLAVTYGWHLPKVAPV