PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS09910 (661 amino acids)

SeqID: BPHYT_RS09910 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2501338: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS09910
MNTNATTAAHAPFHPLDPLSGAEMQLACDLVKAAEKLDSHARFPMVELREPPKAEVVAFK
TGEYFSRTAFVLAIDRTNGATIEFEVDLREKKIAARRVMPFGEAPYGQPPIMIDDFMNAE
QIVKSDEAWRVAVMKRGLSEKDLERVQVDPFSAGCFDRENENGRRLVRCVSYYRETLTDN
GYAHPIEGVMAVVDLLEKKVIELVDDGRIIPIPRAKHNYDTPSLGEPRSTLKPLSIDQPD
GPSFTIDGWHVNWQNWNFRVGFTPREGLVLHQLSWDDGKSTRPIIYRASVTEMCVPYSDP
TTNHYWKSAFDAGEYGLGKLANQLELGCDCLGTIRYFDIPSADDFGNPFVMKNAVCMHEE
DYGTLWKHYEFRTGVFEMRRSRRLVISFFATVGNYDYGFYWYLYQDGTIQLECKLTGIVQ
TSAVADGDTYPWGGMITENLGGPTHQHFFNARMHMMVDGERNTVTEHEFVPRPMGENNPY
GNVFDTTKRVLKTESEAARNANGSTGRYWKVSNPNVKNAVGANPGYKLVVNDSPLMLADE
RSKVRQRGGFATRHVWVTPFDPAERYASGDYPNQHSGGDGLPRYIEANRNIENEDVVLWH
SFGHTHVCKPEDFPVMPVEYAGFMLKPNNFFSANPTMDLPAERDLNSVEDGKSTDHGCCK
H

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory