PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS10160 (861 amino acids)

SeqID: BPHYT_RS10160 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS10160
MLENFRAHAAARATLGIPPLPLTAQQTAELVELLTNPPAGEEQTLLDLITNRVPAGVDEA
ARVKAGFLAAVAKGETTCALISRARATELLGTMLGGYNIQPLIELLSDAEVGTVAAEALK
KTLLMFDAFHDVKELADKGNANAKAVLQSWADAEWFTSRPEVPQSLTITVFKVTGETNTD
DLSPAPDATTRPDIPMHALAMLKNARPGITPEEDGKRGPIKFIQSLKEKGHLVAYVGDVV
GTGSSRKSATNSVLWFTGEDIPFIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSQ
MEMGDVVELRPYEGKALKNGAVIAEFKVKSDVLFDEVRAGGRIPLIIGRGLTAKAREALG
LAPSTLFRLPQQPADSGKGFSLAQKMVGRACGLPEGQGVRPGTYCEPKMTSVGSQDTTGP
MTRDELKDLACLGFSADLVMQSFCHTAAYPKSVDVKTHRTLPDFISNRGGIALRPGDGVI
HSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGTMPLDMPESVLVRFKGK
MQPGVTLRDLVNAIPLYAIKQGTLTVAKQGKKNIFSGRVLEIEGLPDLKVEQAFELSDAS
AERSAAGCTVHLNKEPIIEYLNSNVTLLKWMIAQGYQDPRSLQRRIKAMEAWLADPQLLS
PDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLSDVAGAKIDEVFIGSCMTNIGHFRA
ASKLLEGKRDIPVKLWVAPPTKMDQKQLTEEGHYGVFGTAGARTEMPGCSLCMGNQAQVR
EGATVMSTSTRNFPNRLGKNTNVYLGSAELAAICSRLGKIPTKEEYMADMGVLTASGDKI
YQYMNFDQIEDFKDLADTVAM