PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS11030 (332 amino acids)

SeqID: BPHYT_RS11030 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11128402: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.58
    CytoplasmicMembrane    3.41
    Extracellular          0.01
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS11030
MKRRLETSSVARGICVALLAACATLANAADAWQPRRPIEIVVPSAPGGGLDLVARTLQSV
IQQEKLSAKPVTVINRPGGGGTVSIAYINSHEADGHFVTVQALPLITNRITGLSTVGIDD
VTPLAVFVTEQVVFSVPGNSPIKSGSDLVQMLKKDPTSVTLGVSSSPGGQSHDAAALVMK
GAGQDPKKMKVVFFDSGGEALTALMGGHVTASATPAGVVLGPSKSGSVRMIAIPGGARQG
GELANVPTWKEQGINVDFTTWRVLVGPKNMTPAEIAWWDNVLQKATASPEWAVAVKRNLW
TADYKNSTQTRAFLQGERNRLTPLLGELGIAK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory