PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS11220 (320 amino acids)

SeqID: BPHYT_RS11220 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597142: binding protein component precursor of ABC ribose transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS11220
MSQRIRRRILTAAVLATATAALPLSSAYAQSAPAHKPKVALVMKSLANEFFLTMETGAKD
YQKHNPSQFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDA
GIIVVNIDNRLDPEVLKSKDLNVPFVGPDNRKGAQKVGDYLAKKLKAGDEVGIIEGVSTT
TNAQQRTAGFKDAMQKVGAKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLAGNDNMAI
GAVSAVRAAGKQGKVLVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKALSG
HKKQAELSGVVETPCDLVTK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory