PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS11750 (393 amino acids)

SeqID: BPHYT_RS11750 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 731052: sn-glycerol-3-phosphate transport ATP-binding protein ugpC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS11750
MSNPSFISFSGVSKSYDGAQYVVDDLNLDVRKGEFLSLLGPSGSGKTTTLMMLAGFESPT
HGEIRLDGRRLDDKPPHQRDIGMVFQNYALFPHLTIAENVAFPLSVRRVSRAEQKKRVQR
ALEMIELPHLANRRPAQLSGGQQQRVALARALVFEPSVVLMDEPLGALDKRLRETMQYEI
MRLHRELSLTIVYVTHDQAEALTMSDRVAVFSDGRIQQAATPTELYENAQNAFVANFVGE
NNGLTGRVVSVGEDWATLALSDGSVIRGRSEPGLRAGDEAMLALRPERAHIPSAEGTQAD
EHSNVVRAHVQELVYCGDHHRVHLALGSRDSFVVKVPNTQRHALPSPGSEIEIAWRHDDC
KILAMSVPRSAPVIPASTPLSPSIITTAPAGAN