PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS12355 (469 amino acids)

SeqID: BPHYT_RS12355 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 115305759: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS12355
MTTSVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSTSESVDAIL
EGMAWLGLDFDEGPFYQMQRMDRYREVLKQMQDAGLVYPCYMSTEELDALRERQREAGEK
PRYDGTWRPEPGKVLPEPPAGVQPVLRFRNPLTGVVAWDDAVKGRIEISNEELDDLVIAR
PDGTPTYNFCVVVDDLDMRITHVIRGDDHVNNTPRQINILRALGGEPPVYAHLPTVLNEQ
GEKMSKRHGAMSVVGYRDAGFLPEAVVNYLARLGWSHGDAEIFSREQFVEWFDLEHLGKS
PAQYDHDKLAWLNAHYIKEADNARLAELAKPFFAELGIDEAALAQGADLAAVVGLLKDRA
STVKEIAENAAMFYRTPAPDAESLAQHVTDVVRPALADLAAALKTVEWTKEAIAAALKAT
LGAHKLKMPQLAMPVRLLVAGTTHTPSIDSVLMLFGRDVVVGRIEKALV