PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS12835 (550 amino acids)

SeqID: BPHYT_RS12835 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129056: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.80
    Cytoplasmic            0.19
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            9.80

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS12835
MSQAIEVKVPDIGDYKDIPVIEVLVKAGDTVEKEQSLVTLESDKATMDVPSSAAGVVKEV
KVKVGDNVSEGSLIVVLEGAEGGAAAPAPAPAAAPAPSAAAAPAAAPVPAASGGGLQEVK
VPDIGDYKDIPVIEVAVKVGDRVEKEQSLVTLESDKATMDVPSSAAGVVKEVKVKVGDTV
SEGSVIVIVEAEGGAAAAPAPAPKQAVEKPSDAPATPSPAPAAPSALAQAPVIPAGEGGA
RHASHASPSVRKFARELGVDVTQVQGTGPKNRITQADVTAFIKGVMTGQRAAPAGAAAPA
AAGGGGELNLLPWPKVDFTKFGPVDPKPLSRIKKISGANLHRNWVMIPHVTNNDEADITE
LEALRVKLNKEYEKSGVKITMLAFVIKAVVSALKQFPTFNASLDGDNLVFKQYFHIGFAA
DTPNGLVVPVIRDADKKGLIDIAKEMAELSKLARDGKLKPDQMQGGCFSISSLGGIGGTN
FTPIINAPEVAILGLSRGAMKPVWDGKQFVPRLTLPLSLSYDHRVIDGAAAARFNAYLGA
LLADFRRVIL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory