PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS13340 (475 amino acids)

SeqID: BPHYT_RS13340 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS13340
MSTINYSEKIPNNVNLADDRALQRALEQWQPNFLAWWGDMGPEGSHGYDVYLRTAVSVDA
GGWAHFDHVKMPDYRWGIFLTPGEQDRKIHFGEHKGEAAWQDVPGEHRANLRRIIVTQGD
TEPASVEQQRHLGLTAPSMYDLRNLFQVNVEEGRHLWAMVYLLHRYFGRDGREEAEALLG
RRSGDDDNPRILGAFNEKTPDWLAFFMFTYFTDRDGKFQLSALAESGFDPLARTTRFMLT
EEAHHMFVGESGVSRVIQRTAQVMNELGTDDVSKLRAAGVIDLPTIQRYLNFHYSVTIDL
FGADHSSNAATFYSSGLKGRYEENKRDDDHQLNGQSYKLLDVQDGKLVEREVPMLNAMNE
VLRDDYIKDSVAGVGRWNKVLDKAGIDFRMTVPHKAFNRQIGTFAGTRVSPDGRVVSESE
WAANEAKWLATPEDRAYVASLMGRVTEAGKFANWIAPPAMGVNRQPVDFEYVRFN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory