PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS13720 (450 amino acids)

SeqID: BPHYT_RS13720 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 11133710: Cystathionine gamma-synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS13720
MSANRFDTLALHAGAAPDPTTGARATPIYQTTSFSFRDSDHAAALFNMERAGHVYSRISN
PTVAVFEERVAALENGAGAIGTASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYT
LRRFGIETTFVKPGDLDAWRAALRPNTRLLFGETLGNPGLDVLDIAAVAQIAHEHRVPLL
VDSTFTTPYLLKPFEHGADFVYHSATKFLGGHGTTIGGVLVDGGTFDFEASGRFPEFTEP
YDGFHGMVFSEESTVAPFLLRARREGLRDFGACLHPQAAWQLLQGIETLPLRMERHVANT
RRVVEFLAAHAAVESVAYPELPTHPDHALAKRLLPRGAGAVFSFNLRGDRAAGRSFIEAL
SLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIAEGTIRLSIGLEDPDDLIDDLKR
ALKAAQKASASSAPHGGAAAAAAQTRPESA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory