PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS13985 (406 amino acids)

SeqID: BPHYT_RS13985 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS13985
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKIERPEVGDDTRHWGPPYLKTPEGEDT
REAAYYLAANRNKRSVTVDIASPEGQRIIRELAAQSDVVLENYKVGQLKKYGLDYASLKE
VKPDIVYCSVTGFGQTGPYAQRAGYDFIVQGIGGFMSITGERDGQPGGGPQKAGVAIADL
MTGMYSTIAVLTALTHRDRTGEGQYIDMALLDVQVAMLANMNSNYLASGQPPVRWGNAHP
NIVPYQTFQTSDGWIIVAVGNDGQFRKFIEAGGRPELADDERFATNPARVRNRDVLVPIL
AEMVRLQGKQQWIAALEAAGVPCGPINDLGEVFENEQVVARGLQVDLPHPSGGTVKLVRN
PINMTGTPPEALAHPPTLGEHTESILRDVLGYDEATIAALRSQSVI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory