PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS14000 (569 amino acids)

SeqID: BPHYT_RS14000 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 22096197: Glutaminyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS14000
MNTERNDAPAASNFIRNIIDDDNRTGKWGQRVETRFPPEPNGYLHIGHAKSICLNFGVAR
SYGGVCHLRFDDTNPEKESVEYVDSIIDAVRWLGFEWEKDGKAELYYASDYYDKLYEFAE
LLIERGKAYVDSQSAEEMRANRGSATEVGTPSRFRERSVQENLDLFRRMKAGEFQEGEHV
LRAKIDMSSPNFNMRDPVIYRIRFAHHYRTGDKWCIYPMYDYTHCISDALENITHSLCTL
EFEDHRPLYDWILNELAEAGVFTRPLPQQIEFSRLNLTYAITSKRKLLQLVTEGHVDGWD
DPRMPTIVGVRRRGFTPESIQLFCERIGVTKVDSWIDMSVFEGALRDDLDEKAPRTAAVL
DPVKLIIDNFPEGVTEPCNAPVHPHHPEMGVREFPISRELWIERDDYNETPPKGYFRLFP
GNKVRLRYGYVIECIGADKDEKGNIVAVHCNYFPDSKSGTEGANNYKVKGNIHWVSAAAA
CPAEVRIYDRLFKEPQPDAGGRDFLEALNPDSKRVVNAYLEPGAREALPEQRYQFERHGY
FVADRVDSKPGKPVFNRIVSLRDSWGKPA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory