PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS15025 (433 amino acids)

SeqID: BPHYT_RS15025 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 116479: Citrate-proton symporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS15025
MSTATHATSTSQESKVKTVFRVVSGNFLEMYDFMVYGYYASAIAKTYFPSGNEFASLMLS
LSVFGAGFLMRPLGAIVLGAYIDHHGRRKGLILTLGLMALGTLTVASIPGYATIGLLAPV
LVLGGRLLQGFSAGVELGGVSVYLSEIATKGNKGFYCAWQSGSQQVAVVFAALIGVFLNK
LLPADQMTAWGWRVPFLIGCLIVPFLFLIRRSLQETEEFKARKHHPKMGEIMKTMAANWG
IVLGGMGMVIMTTVSFYMITAYTPTFGKEVLKLSSIDTLIVTVCIGLSNLVWLPLAGALS
DRIGRRPVLLAFTILTILTAYPALQWLVADPSFARLLEVELWLSFLYGSYNGGMVVALTE
VMPVEVRTAGFSLAYSLATTIGGFTPAISTLLIHSTGNKAAPGLFLGAAAICGLIATLVL
YRTPESRNQYRTA