PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS15945 (520 amino acids)

SeqID: BPHYT_RS15945 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS15945
MSFDSPTRSTIDIPALLAALPERIADIPALAAARDPQHIAVIEDARRLTSAQLLEAVDAA
TALLREWGVRGGDRVMIVAENSIVQIVLLFATARLDAWALVSNARLSAAELDSIRAHAQP
RIVAYATESSADAKLHAERHHAAKAPAFTPDIGAWSYTVDSAAVAEPVEAASERQCAALI
YTTGTTGAPKGVMLSHRNLLFIAAISSRLRKVGPDDVVYAVLPISHVYGFASVCLGSLHA
GATLRLVPRFAPEAVRRALADERVSIFQGVPAMHAKLLEHLQTHGHAWSAPHLRFAYSGG
SPLDAALKAQVESVCGLPLHNGYGMTESSPTVSHTMLDAPRSDCSVGEVIPGVEVRFVGL
DGIDAAQGDIGELWVRGPNVMLGYYRSLEQTRAAVTEDGWLKTGDLARQDADGALHIVGR
SKELIIRSGFNVYPAEVEHVLNAHPQVVQSAVIGRAVEGNEEVVAFVELLTGATVTPAEL
IDCCGERLAPYKRPAEVKVLAALPAASTGKILKHRLREFL