PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS16155 (493 amino acids)

SeqID: BPHYT_RS16155 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598778: |glycerol kinase|4013685 - 4015202]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS16155
MSFLGIDLGTGSLKVAIVDENGREQAVASVAYPIETPQAGWAETSVQTWWRALCEAAARL
PDGLRRDVRAIGFSGQMHGVVLIDAAGEAVRPAMLWPDTRALALLEAWPEPQPNPVAPGM
AGPLLRWIVLHEPQSASRTRWALQPKDWLRVALGGAVATDPSDACATALADPAGVWDAAL
LDRLEIPHEWFAPLAPSYAAGGVLSESAARALGLRAGIVLATGAADTPCAALGSGLAHDG
DALLTTGTGGQIVVLAEHAPAAVKGLHRYRAASDHWYRMAAMQNVGIALERARGWLSYEW
ADAYRDAFGDATNATNATNATATFSANTAAASGLTFLPYLTGERTPWLNPMARGGWLGLA
LDHTRGTMMRAAFEGVAFSLRAGLDAIRASGATVTALKLAGGGSVDARWRQLLADALNVE
LHAVDCPNAAPRGAAILGGLASGHWHARDLAALAPGATRVAGPQGDAALAERYERFLDLY
GRIETWFTDTPSQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory