PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS17015 (455 amino acids)

SeqID: BPHYT_RS17015 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS17015
MFEKILIANRGEIALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSY
LNMPALISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAK
QTMIKTGVPCVPGSEGALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVN
AVNMTREEAGRAFGNPQVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQKVI
EEAPAPGIARRLIDRIGDRCADACKKMGYLGAGTFEFLYENGEFYFIEMNTRVQVEHPVT
ELITGVDIVQEQIRIAAGEKLAFRQRDIVFKGHAIECRINAEDPFKFIPSPGRLTSWHMP
GGPGIRVDSHAYNGYFVPPNYDSMIGKLIAYGATREQAIKRMRIALSEMVVEGIQTNIPL
HRELMLDAKFVEGGTSIHYLENRLAAKLQAAPEEA