PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS17295 (557 amino acids)

SeqID: BPHYT_RS17295 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS17295
MDKIWLKSYPPGVPAEIDPSRYSSVGELLEEAFREHRAKPAFVCMGKEISYGELDALSRK
LAAWFQSKGLARGARIAIMMPNVLQYPVAIAAILRAGYVVVNVNPLYTPRELEHQLKDSG
AEAIILLENFAVTLQAIVRNTSIKHVVVAAMGDLMGIKGTLVNFVVRKVKKMVPAWSLPG
HVKFNTAIAEGARQNFKPVQQGPEDVAFLQYTGGTTGVAKGATLLHRNLIANVLQSEIWL
DPVRANRKDIDQFVTVVALPLYHVFALTVCGLLTIRTGGLGVLIPNPRDIPGMIKALEGY
PITTIPAVNTLYNALLNSPDFHKLDFSKLIAANGGGMAVQEAVAKRWYEQTHTPIIEGYG
LSETSPCVTCNPVTVTEYSGTIGLPLPSTEISIRDDEGNEVPLGQPGEICIRGPQVMAGY
WNRPDETAKVMTADGFFKSGDVGLMNDGGFVKIVDRKKDMILVSGFNVYPNEIEDVVAKL
PGVFEVAAVGVPDQHSGEAVKLFVVKKDQALTDADIFAYCKQQLTGYKRPKIVEFRTELP
KSNVGKILRRELRDGRA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory