PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS17695 (206 amino acids)

SeqID: BPHYT_RS17695 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027874: Multiple antibiotic resistance protein marC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS17695
MDILKSFISLLALINPVGAIPFFMSLTANQSDVERRRTIRIAAISVFCVIAITTLLGQQI
ISFFGISVGSLEVGGGIIMLLMAINMLNAQIGNSRSTPEERHEAEQKDNIAVVPLAIPLL
TGPGAISTTIIYAAGSAHWYDRISLVAIGAVLAAICFFSLRLAEPIARWVGRTGINIGTR
LMGLMLSALAVEFIVDGLKALLPNLK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory