PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS18270 (362 amino acids)

SeqID: BPHYT_RS18270 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS18270
MATPQFHPLRIREVRPETADSVSVAFEVPAELRDHYRFTQGQFVTLKTHIDGEETRRSYS
ICVGVTDYDRDGELRIGIKRVRGGRFSNFAFDTLQPGHTIDVMTPDGRFFTHLNADQGQQ
YLAFSGGSGITPVLAIIKTTLEVEPRSTFTLVYGNRSVDQIMFAEELEDLKNRFMNRFVL
YHVLSDDLQDVELFNGVLDQDKCAAFIENLLPADAIDEAFICGPAPMMDAAEAALKAAGV
PSEKVHVERFGSPLPQAGVPPVEITEDTPAADLEIVLDGKRRKLRLPYQGVSVLDVGLRA
GLALPYACKGGVCCTCRAKVLEGEVKMEKNYTLEEHEIRDGFVLTCQCHPISDRVVVSYD
ER

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory