PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS18310 (760 amino acids)

SeqID: BPHYT_RS18310 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS18310
MDEQLKQSALAYHQNPKPGKISVTPTKPLSNQLDLSLAYSPGVAAACMAIYDEPLDAQKY
TSRGNLVGVITNGTAVLGLGNIGPLAAKPVMEGKGCLFKKFAGIDVFDIELAESDPDKLV
EAIAMLEPTLGGINLEDIKAPECFYIEKKLRERMKIPVFHDDQHGTAIIASAAILNGLKV
VGKKLDEVKLVCSGAGAAAIACLDLLVNLGLSKKNVLVTDSKGVIYEGRGNLDPSKERYA
ANTEARTLADAIRGADVFLGCSSAGVLKPEMVAEMGTQPLILALANPEPEIRPEDAKKVR
PDCIIATGRSDYPNQVNNVLCFPFIFRGALDVGATTITEEMKLACVRAIAELAEETDQGD
EVAKAYEGHSLEFGPEYLIPKPFDPRLIIKIAPAVAQAAMDSGVATRPIKDMDAYREELG
TTVYRTGMVMRPVFAAAKSEPARIVFAEGEDERVLRAAQFVLLEKIAKPILVGRPSVIEM
RLKKMGSKLKCGDDFEIVDPEDDPRYQQSWQAYHELGAREGVTPDVAKAAMRKFNTLIGA
ILVRLGEADGMICGMIGQYHAHLKFIEQVLGKADNVQNFAAMNLLMLPGRNLFICDTYVN
ETPTAEQLADMTMLAAGEIEKFGITPKVALLSNSNFGSAPSSSSQRMAAARKLIVERAPS
LEIDGEMHGDAALSEVVRKAAFPGTTLTGEANLLIMPNVEAANITYNLLKMIGGEGVTVG
PFLLGAEKPVHILTPAATVRRIINMTAVASANARKAVNAK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory