PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS18740 (561 amino acids)

SeqID: BPHYT_RS18740 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599167: probable acyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS18740
MERHSFGQTHEVTNQVPPLADYNLFSSDAALSAALERDGAGWHRGALVRHGAALTTPETL
ALAELANRHEPELVTHSPRGERIDALEFHPSWHALLSLLRREGLHALPFSDPQRGAMVAR
CAGYFLHAQIESGSLCPLTMTFASIPVLQREPALFATLRDKLYAREHDSRDLPLKQKTSA
MIGMGMTEKQGGSDVRSNQTRAYSTAGSGRGAAYRLVGHKWFFSAPQCDAHLVLGRTDEH
EGLSCFYVPRFAPDGRKNNVQIQRLKDKLGNRSNASSEVEFLDAFGIMIGDEGRGVPTII
EMANYTRLDCVIGSAALMRAALVQAIHHARHRSAFGRHLADQPLMRNVLADLALESEAAT
VLFMRLARAFEESTDAASTSLAERAWRRIVTPAAKYWVCKRALEFTGEAMEVWGGNGYVE
TGPMARFYREAPVNSIWEGSGNVMCLDVLRAMEREPEAAQALFAAWHADAQAHPALSAAL
GKLAATLNGPAEHREASARRIAQQVVLIAQATLLLKHAPAEVAEAFVATRLAEGCGESGR
VYGTLPATFDHAAIIERAFPV