PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS19350 (382 amino acids)

SeqID: BPHYT_RS19350 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12230875: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS19350
MQHKMKQLAGAALVAAMSLAGTANAQSTEDVKVGFAGPMTGAQAHYGKDFQNGITLAVED
MNATKPVIGGKQVRFVLDSADDQADPRTGTTVAQKLVDDGIKGMLGHFNSGTTIPASRIY
ANAGIPEIAMATAPEYTQQGFKTTFRMMTSDTQQGSVAGTFAVKTLGVKKIAIVDDRTAY
GQGLADQFEKAAKAAGGQIVDREYTNDKAVDFKSILTKLKSVQPDLIYYGGADSQAAPMV
KQMKALGIKAPLMGGEMVHTPTFIQIAGDAANGTVASLAGLPLEEMPGGKDYVAKYKKRF
NEDVQTYSPYAYDGAMAMFDAMKKANSTDPAKYLPVLAKTSMPAVTSANLAYDSKGDLKN
GGITLYKVVDGKWTTLQSVGGK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory