PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS19450 (594 amino acids)

SeqID: BPHYT_RS19450 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS19450
MKRIMQNKFFWLFLVVLFALPVLPQPIHVPEYWVTLLNYIGLYSIVAIGLVLLTGIGGMT
SFGQAAFVGIGAYATAYLTTRYGVSPWLALIAGVAVTALIALMLGLVTMRLSGHFLPLGT
IAWGLALFYLFGNLEMLGKYDGINGIPVLNVFGIDLESGRHIYYLIWLVVLGAVISVQNL
LNSRPGRAIRALRGGGMMAEAMGVNTGWMRVVIFVYAAVLAAVSGFLYAHLQRAVNPTPF
GLNHGIEFLFMAVVGGVSHVWGAVLGAAILTVLQDYLQTLLPKLLGENGNFEVIVFGILM
VLLLQYARQGVWPFVARFFPKGPRAHLADHAEPLPQRSKPAAGEDLLTVNKARKQFGGLV
AVNDVSFEVKAGQIIGLIGPNGAGKSTTFNLVTGVLQATSGEITFCGERIDSLSSREIVK
RGIGRTFQHVKLLPGMTVLENVAIGAHLRGQAGVWRSVVRLNSAEEARLMAEAARQIRRV
GLEQHMYDEAGSLALGQQRILEIARALCCDPTLLLLDEPAAGLRYQEKLQLADLLRRLKA
EGMSVLLVEHDMDFVMNLTDRLVVMEFGTRIAEGLPQEVQQDPAVLEAYLGGVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory