PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS19495 (570 amino acids)

SeqID: BPHYT_RS19495 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS19495
MSYTDTTHATRRLEGEFDYIIVGAGTAGCVLANRLTQDPDVQVLLLEAGGKDDYHWIHVP
VGYLYCIGNPRTDWLYKTQAEAGLNGRALSYPRGRVLGGSSSINGMIYMRGQREDYDEWA
RVTNDASWSWNSVLPVFKRSEDHHAGASESHGAGGPWRVEKQRLKWKILEEFSRAAQETG
IPATDDFNRGDNTGVGYFDVNQKRGIRWNASKAFLRPALKRPNLTVITGAYTQRVVFEGR
RCTGVEYRGDNTDYLAKARCEVILSSGAVNSPQLLELSGIGNGARLQNLGIEVVDDLRGV
GENLQDHLQLRMAYKVDGVRTLNTASAHWWGKLLIGMQYAFFQSGPMSMSPSQLGAFAKS
DPGDRSLTRPDLEYHVQPLSLDRFGEPLHRFNAFTASVCQLRPTSRGSIHIESADASAPP
LIAPNYLSTDYDRHVAANALRLTRRIAAAPALARYRPQEILPGIQYQTEEELQQAAGAVG
TTIFHPVGTCRMGTTDDPGAVVDNRLRVIGVDGLRVVDASVMPTITSGNTNSPTLMIAER
ASDMIREDRRARVGGSFAAQTCATRSMSAV