PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS19715 (334 amino acids)

SeqID: BPHYT_RS19715 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2507360: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS19715
MTSKLRRLTLSAMAAAALAAPFAMQLSAHADAPLKVGFLVKMPEQAWFINEQKAASALGQ
KDGFSVVNIGTPDGEKVLAAIDNLGAQGAKGFVICAPDVRLGPAIQARAKRYNMKFVTVD
DQLVDSTGKPLPNVPHLGMSAFKIGNQVGTAISEEMKRRGWKPEEVGALRITNYELPTAK
LRTDGATQSLLAGGFKKENIFDAPQKTTDDEGGFNASSPVLAQHPNIKKWVIFALNEESV
LGGVRATEQLHIPAADVIGVGINGAGEAFAEFQKKEPTGFYGTIAVSSTMHGKESTENLV
EWIKDGKQPPADTQTTGKLMVRSNWQDVRKELGI