PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS20235 (702 amino acids)

SeqID: BPHYT_RS20235 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [16 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141321: Ferrichrome transport system permease protein fhuB]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS20235
MTTLAARKRLSRSTQAMDSYRAPVKSRVTTIGAALVALIVIVAVMRLAPGFRTWLAAPTG
SDAAQLAGILLFDLSVPRILAALVAGGCLAVAGTLFQSLTRNPLASPDLLGITGGAQLGL
LAAMLVPSLAGVASVPLLFACGLGAAACVAAAAGGWRATPLRLVLAGSVCMLLFSALTTL
ILAFFEQSIVGVSLWASGSLYQPGAAGLKIAASWLVLPLIALPFVIRPLDPLALGDDAAA
AAGVRVDATRLAAMVVAVGFASVAVSVAGPLSYVGLIAPNLLRQMRGAKASRLAALVPLS
ALVGGALVLVTDSAVQALDLDATLSTGVAIAFVGTPLMLAMIRSGAAWSGALHAGQERAV
ARAGTRFVRAIDARPWPLTASALVLLGVVLVCAGASFGPTTIGAQRWLAAFDHRDELARM
LLDLRLPRLICALLAGALLAASGVLMQSIVRNPLAGPEVLGVTQGAGLATLAALVMWPLA
NHSTLAAASLAGGGITLALTLLLNRRHRYAPLAVALTGIVIGTLWTTLSQWLITQQSVQP
ARFVVWLVGGTYGRSWGEVTTLLPWCVLALPVFALLARPLDLLALGDDQAASLGLPIGVL
RPLVLTVATLAACAAVAAVGPVGFIGLMAPHLASMLGARAHRTRLWLAAACGALVLVVAD
IAARTLLAPREIPAGVLTALIGAPYLLALLIVEARREKRGKR