PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS20685 (537 amino acids)

SeqID: BPHYT_RS20685 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6166548: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS20685
MSTPISSLADAAPVLRVHGIGKTYAEPVLADVSLDLHAGEVLALTGENGAGKSTLSKIIG
GLVTPTTGSMTLAGAAYTPASRKDAEALGVRMVMQELNLLPTLSVAENLFLNRLPQRGIF
GWIDRAKLREDARHAMAQVGLDAIDPDTLVGTLGIGHQQMVEIARNLIGDCRVLILDEPT
AMLTAREVDLLFEQVERLKARGVALVYISHRLEELKRIARRAAVLRDGRLVHVDEMANLT
TDRLVTLMVGRDIGDRIDLGERRIGEMTFKVSGMTREPVVRDVSFEVKAGEIFGISGLIG
AGRTELMRLIYGADRADAGTVSIVREGGALEPVTIASPSDAVKHGIALITEDRKGEGLLL
TQPIAANISLGHLRSVSSKGVVDGRREASLARRQIDAMRIRSSGPAQPVSELSGGNQQKV
VIGRWLARDCTVLLFDEPTRGIDVGAKFDIYALMGALAREGRALVVVSSDLRELMAICDR
IAVMSAGRMTGLFERGNWTQDALLAAAFAGYAKRDDMLHEPIEPDAKAPGESKLVEY