PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS21005 (330 amino acids)

SeqID: BPHYT_RS21005 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 6685241: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS21005
MTAKANIVVIGTGGTIAGQGKASVNTSTYMCSVLGIDEILGSIPHAGELANLRAEQLLQT
GSENFNNTHLLAIGNRVAELLARNDVDGVVITHGTDTIEETAYFLHLTLKSAKPVVVVGS
MRPPSAMSSDAALNLYDALAVATHPSSRGLGTLVVANNEIHTARDVVKSNSFKLDAFRSP
YGALGYVIEGAPRYYRRPARAHTLDTPWSITTLRSLPKVDIVYAYGALEPGAISAITANA
RGLIYVGTGNGNVASHLIDPLRDAARRGVHVVRASRTGSGIVLHNGAQPDHEYGWLTVDD
QIPQKARILLTLALTQTDDTAALQAVFERY