PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS21775 (553 amino acids)

SeqID: BPHYT_RS21775 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS21775
MNTPVTLRALIDERAAQHPDKPFLLAALDDDETPVPDRRATVLTFRELRDDCRALEARFR
EAGLQPGEVISVFMGNGIQTARLLLAAMYSGLVANPLNLLCQPSQVRYIVDHSDTRMIFA
ASDTHAVIGAAVAELRAAGLTREIALIQTEPDDAEPPSLAKHEPALVEAAAHGASGATAP
APALAKRSVAPRPVTSRATAYEPTADDVALLMYTSGTTGTPKGVLLTHRNLVANARNISA
EHRLASDDRVLASLPLYHINGLVVTLLAPLFHGGSAVMTSRFSARTFWRDVALHACTWIN
VVPTIVAYLLNADEACTYDLSALKFCRSASAALPADHHRAFEARFGIGVIETMGMTETAA
PVFSNPYEMERRRVGSIGLPSGGEAKVIDREGRECAANECGELVLRGEQVMGGYYKRPEE
TAAAFTSDGWLRTGDLGYRDADGYFYINGRAKELIIKGGENIAPREIDEALLRHPDVLDA
AAVGVPDPAYGQDIVAFVVPRMSDGRGAPDPADLREHCLRELGRYKTPKEFRFVDELPRG
PSGKVQRLKLVPT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory