PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS21960 (425 amino acids)

SeqID: BPHYT_RS21960 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 465601: Inner membrane transport protein yeiM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS21960
MALIVRNILGIAVLLLIAFIFSTNRRAIRLRTVISALLVQIGIGAFILFVPFGKSILSGA
ASAVNHVLGYGNAGIEFLFGGLVQAKMFQVFGDGGFVFAVRVLPAIIFVTALISVLYYLG
VMRWIVIVLGTVFQKLLGVSKIESFSAVTTIFLGQSEMPAVVKPFTAEMTGAELFAVMSS
GMAAVAGSVLAGYAGLGVRIEYLLAASFMAVPGGLLFAKIIHPSTEPSRVHLENLNFDEK
RPANIIEAASSGATVGLKIAVMVGAMLIAFVGLIALLNGIVGGVGGWFGHPQLSMQSVLG
VIFAPLAYLIGVPWNEATIAGNFLGQKVILNEFVAYASLSPYLKDAASVSAAGLAALDPR
TIAILSFALCGFANFSSIAVLTGGFSAVAPARRAEVARYGLRVVLAATLSNLMSATIAGM
FITLN