PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS23060 (655 amino acids)

SeqID: BPHYT_RS23060 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS23060
MSDTIRLDGRVLYLSQDPAVIEAQLAGENFTRATAGPLRDNVSTDEITPVTVMLTYDERL
GQFPYVGFKAGERMPIGRNAVKNGGFQVTVAGKRYGKGSSRESSPLAELSAGIRLIVAES
FERIYQQNCDNIGILTTTDFSVLDRLSAGEAVPIDEFLKGRDALTQQIIRSGGLLAYSKF
ADWPAPRVGDSANADACADMAQAAQPKTLVEKIIERHLHPASVGAQRGDGVFIAADWRFS
HDYFTGMCAHLMHRAFGKPAPLHAPDHIIAFQDHLVLASQSIPHVRDGLLPGVANLMEGH
TSFSRDYPVRSHGALDGMPGSEGICHALMAEQYALPGQVACGTDSHTPHSGALGCLAFGA
GATEIANSWVTGYVRCKVPETLRIEISGQLRDGVTAKDVVLHLLQMDAIRSGGAIGLVFE
YGGSAVRAMSIDERATLTNMVAELGGFTGIVEPDERTVAFLKERRGVDFTLENWMKSDAG
ATYRDTISIDASAIQPMLARPGDPGNGVPALQLEQDVAIDIAYGGSCTAGKREDFDFYHE
VLHWGVEQGLRVPEGTRLYLQFGTMAVRAYCEERGYLPVFERAGVTLVMPGCGSCANCGP
GQSAEANEVTISAINRNFPGRSGPGNVWLASPYTVAASALAGKITTFEQLKRVRG