PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS23430 (402 amino acids)

SeqID: BPHYT_RS23430 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS23430
MKIVRADVIVTCPGRNFVTLKIVTDEGVHGIGDATLNGRELAVASYLKDHVCPLLIGRDP
GCIEDTWQYLYKGAYWRRGPVTMTAIAAVDMALWDILGKVTGMPLYKLLGGASRESVMVY
GHATGRDIPEALDRYAEHIEAGYQAIRIQCGVPNMRSVYGVSKGSGMYEPATKGAVEEQS
WSSEKYLDFVPKLFEAVRDKFGFDTHLLHDVHHRLTPIEAARLGKSIEPYRLFWMEDPTP
AENQAGFRLIREHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRATLTHAGGITHLRRIAD
FASLYQVRTGCHGPSDLSPVCMGAALHFDLWVPNFGVQEYMGFPQEALDVFPHAWRFERG
TMHPGEAPGHGVDIDEAAAARYPYDPAYLPVARLEDGTLWNW