PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS23870 (328 amino acids)

SeqID: BPHYT_RS23870 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 732294: ABC transporter periplasmic-binding protein ytfQ precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS23870
MANTRRAACRALGALALCAGFGALTLATPGAYAQDKQITLGFAQVGAESAWRTANTESIK
SAAADAKIKLKFSDAQQKQENQIKAIRSYIAQKVDVIAFSPVVESGWEPVLREAKAAKIP
VILTDRNIDTKDTSLYVTMIGSDFLEEGRRGGHWLEDHFKNDQGPINIAELQGTVGSAPA
NDRHSGLVEVIKSDPKFKIIASQSGDFTLAGGKQVMEAFIKTYGNKINVVYAHNDDMALG
AIQAMEEAGMHPGKDITVVSFDATKGGFQAMAAGKMNVDVECSPLLGPQLMSAVKDVVAG
KSLPKRILTEETVFPMSVAAQTLPTRKY