PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS23885 (365 amino acids)

SeqID: BPHYT_RS23885 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 18266861: Inner membrane ABC transporter permease protein yjfF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS23885
MRRILEAWAHIVDPRTLPIAVTILLFCALFGFGSVMYTGFFSWQVLLDLLVDNAFLLIVA
IGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGAVQGALI
HFFRLQAFIVTLAGMFFARGLCFLITTQSITITDPTFQKISAFRLDIGVGSVTANVLIAF
VTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTF
YVLSGYGLQGQGMELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGTLSS
WWTRIVIGALLCAFCLLQRLIERHAKSVGRPGGTGAVVTAGRERGHADGPAASDSHVIGR
APEQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory