PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS24175 (330 amino acids)

SeqID: BPHYT_RS24175 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 586718: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS24175
MNKKFAPSRVSLIVAASVLALSTVSAQARVFRVSDVHGDTYPTNMAVKHMGEEINKATGG
KDSVKVFGNSALGSENDTIDQVRIGALDMARANGAAFNEIVPESMIPSLPFLFRDIDHFR
KVMYGPEGQKILDAFKAKGMIALTFYESGARSIYTKKPIHTPADMKGLKVRVQPSDLMVD
EIRAMGGTPTPMPFAEVYTGLKTGLVDAAENNLPSYEETKHFEVAPVYSETQHSMTPEVL
VFSKKVWDTLTPQEQEIIKKAAADSVPYYQKLWTAREADASKTVTKGGATIVASTQIDRA
AFVKAMQPVWAKYEKTPQMKQLVDEIQAVK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory