PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS25100 (464 amino acids)

SeqID: BPHYT_RS25100 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597639: L-serine dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS25100
MNVSVFDLFKIGIGPSSSHTVGPMIAACRFASHIEDANLLGFVRGVKVDLFGSLGATGKG
HGTDKAVLLGLEGNLPDSIDPDLIEPRLQAIRVTKQLVLLGKHPVKFDEREHLGFFRKLM
PGAPGSGIVHPNGMRFQAFDENGQLLVEKEYYSVGGGFVVNREGDRVNGVRAGAEVPYPF
RTGDDLMRVCRETGLSIAQITLRNECAARPEQEVREGLLAIWRTMSACVERGCKVRGELP
GPMHVKRRAADLCGQLRSRSEESLRDPLSMLDWVNLYAMAVNEENAAGGRVVTAPTNGAA
GVIPAVLHYYVKFMHASNDEGIVNFLLTAAAIGIIYKETASISGAEVGCQGEVGVACSMA
AAALAAVMGGTPTQVENAAEIGMEHNLGMTCDPVGGLVQIPCIERNAMGAIKALNAARMA
MKGDGQHYVSLDNVIKTMRETGADMKTKYKETSRGGLAVNVIEC

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory