PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS25790 (500 amino acids)

SeqID: BPHYT_RS25790 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS25790
MQVVGVHKRFTGVHALRGVSLSFERGQIYHLLGENGCGKSTLIKIISGAQPPDEGELVIE
GVRHARLSALESLAAGIETVYQDLSLLPNMNVAENVALTSELATHQGKLARTFDRRELAR
TAARALEAVGLPGNAEFQATLIEQLPLATRQLVAIARAIASEAKFVIMDEPTTSLTQKEV
DNLIAVLANLRAQGVTVLFVSHKLDECYAIGGEVIVLRDGQKMAQGPIAQFTKAQISELM
TGRHLSNERYREGAHEPNIVLEVRGYTRAGQFSDVSFGLHGGEILGITGLLDSGRNELAR
ALAGVAPAQSGQVRLDGKSISLRTPSDAKNHRIGYVPEDRLNEGLFLDKPIRDNVITAMI
SSLRDRFGQIDRVRAQALAEQTVKDLQIATPGVDKPVQSLSGGNQQRVLIGRWLAIDPRV
LILHGPTVGVDVGSKDIIYRIMQRLSQRGIGIILISDDLPELLQNCDRILMMKKGRVASE
YQADTLSEADLYHALLSEAA