PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS25975 (1203 amino acids)

SeqID: BPHYT_RS25975 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS25975
MRFRKVLIANRGEIACRVIRTLKRLGIASVAVYSEADRHAMHVMLADEAVCIGPALAAQS
YLNSAAILDAARACGADAVHPGYGFLSENAAFAQACDDAGIRFIGPTPQHMREFGLKHTA
RELAQANDVALLPGTGLLPDVSAALREAESIGYPVMLKSTAGGGGIGMSLCRDAAQLEGV
FASVARLGEANFANAGVYVEKFVENARHIEVQVFGDGKGGVISLGERDCSVQRRNQKVIE
ETPAPGLTHAERSALHASAVRLAQAVKYKSAGTVEFVFDADTRRFYFLEVNTRLQVEHCV
TEEITGIDLVEWMIREAEGELAPLDTLATVPQGASIQVRLYAEDPHKQFQPSAGVLTHVA
FAADARVDTWVDSGTEVSAFYDPLLAKLIVKGETREAGLAALRAALEQTQLYGIETNLDY
LRAIAGSATFARGEQTTAFLGRFMFAPHTIDVLDGGVQTTVQQTPGRTGYWDIGVPPSGP
MDDLSFRLANELLGNPADAAGLECAMVGATLRFNTATLFVLGGAPLAATLDGAPVTLWQV
TRAPAGAVLKLGGVTGAGMRACLALKGGLQVPDYLGSKATFTLGQFGGHAGRALRKGDVL
HLADEAGSGAAGAQLDKSRVPVLTHDWTLGVLDGPHGAPDFFTPDDIAMLYGTRWTVHYN
SSRTGVRLIGPKPQWARTDGGEAGLHPSNIHDNAYAVGAVDFTGDMPVILGPDGPSLGGF
VCPVTVVGEELWKLGQLRPGDTVRFERMPVKAMLASPKHAMEASEAAAHDCILYRDPTAG
EGTGVVYRRSGDQNVLIEYGPLVLDLNLRFRVHALMNWLDAHRLPGIIDLTPGIRSLQVH
FDPRVLSHDTLLAHLQQAERELPAVDAMRVPNRIVHLPLSWDDPSTRIAIERYMQSVRPD
APWCPSNIEFIRRINGLNSIDDVKRIVFDARYLVMGLGDVYLGAPVATPLDPRHRLVTTK
YNPARTWTPENAVGIGGAYLCVYGMEGPGGYQFVGRTVQMWNRYRTTREFEAGKPWLLRF
FDEIRFYEVSEAELAELRTDFIAGRASLKIEESVFDLGAYNRFLKDEADSIAAFKSTQQA
AFDAERERWDAAGHAAYVGETDGDAAAGGNPANDTLATGQQGIVADVSGSVWKLLVKEGE
RVGDGQVVAIVESMKMEISVTASGDGVIETIDCAEGAAVVAGQRLMVMRAGIAADATEEA
TCK