PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS26525 (383 amino acids)

SeqID: BPHYT_RS26525 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12230875: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS26525
MNRRYWLLSATVCALATYMPFSWAADPQIVKIGFVGPLTGPVARVGKDLQYGAQLALDEE
NAKNPMIGGKPVKFVLDVQDDQADPRVAIQVAQKLVDDGVVGVIGHYNSGCSIPASTVYH
QANVAMITPGSTNPQLTKQGFKNVFRTMGHDGIGGVVAGHFVVEQMKAKRIAIIDDRTAF
GQGLADAFEKGVKEANGNIVDREFTNDKAIDFRAILTTLKSKNVDLIFFGGLDEQGAMLV
KQMRSLGMSTQLFGAGALKSNAFLQIAGTAGNGTQDLEPGPALDKLPAAQAFGKRYKARF
NQDVELYAPFSYDAALAMLKAIHTADSLDRAKIVDSLAKVTVTGVTGNITFDPYGDLIKP
PYTLFQVEQGQWKSVKTVGGSGA