PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS26655 (764 amino acids)

SeqID: BPHYT_RS26655 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS26655
MARTHIPGFPRIGAQRELKFAQESFWRGESDEQYLLGVARELRARHWQLQQDAKLDFVTV
GDFAYYDQMLNLSALLGALPQRFGFDAKTLSLARYYELARGNAAQPAMEMTKWFDTNYHY
LVPELGPQTTFDGGVEWLFDEIDEALALNLPVKPVLIGPITYLWLSKSHVAGFDRLSLLP
KLVIRYSRLLEKLKQRGIEWVQLDEPALCVDLPVEWLDAFSAAYDVLGTSGVKVLLATYF
ESAAEHAPRVAVLPVAGVHLDLVRAPQQLDAWRAALPKHAVLSAGVIDGRNIWRADLGEI
FESLQALHAEFGERLWVSSSCSLLHVPVSLDAEQKLDADLKSWLAFATEKLGEVATLALA
LRDPAAAEATLAAADRALDARRHSSTVVNALVQKRVAAVSSAMADRQSPFAERNRLQREA
LGLPLLPTTTIGSFPQTPAIRQARAAYKRGELRALDYLQRMRAEIEIAVRKQEELGLDVL
VHGEAERNDMVEYFGEQLWGYAFTENGWVQSYGSRCVKPPIIYGDVYRPEPMTVETTRYA
QSLTQRLMKGMLTGPVTMLQWSFVRDDQPRSTTALQLALAIRDEVVDLEKAGIRIIQIDE
PAFREGLPLRRGDWAAYLEWATRVFRISAAGVADQTQIHTHMCYSEFNDILPSIAAMDAD
VITIETSRSAMELLDGFGAFAYPNEIGPGVYDIHSPRVPDAQAMQRLLERACEVIPAERL
WVNPDCGLKTRGWPETEAALTNMVRAAKALRAKLAAKQPDEVTA