PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS27185 (516 amino acids)

SeqID: BPHYT_RS27185 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 132119: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS27185
MTNATQRGPGPAAEPEPPVSREILQLKGVSKRFPGVVALDGIDLDLCAGEVHAVCGENGA
GKSTLMKIISGQYRADEGVVRYRGAPVQFSSTSDAQAAGIAIIHQELNLVPHLSVAENIY
LAREPKRGPFVDYRTLNSNAQRCLQRIGLNVSPSTLVGALSLAQQQMVEIAKALSLDARV
LIMDEPTSSLTESETVQLFRIIRELRAGGVAILYISHRLDEMAEIVDRVTVLRDGRHIAT
SDFASTTVNEIVARMVGRPLDDAYPPRQSTPSNQILLRVRDLQRTGVFGPLSFELRKGEI
LGFAGLMGAGRTETARAIFGAERPDSGSITLGDEPVTIGSPREAIRHGIAYLSEDRKKDG
LALSMPVSANITLANVRAISSRGFLRFSEETAIAERYVRELGIRTPTVKQIARNLSGGNQ
QKIVISKWLYRGSRILFFDEPTRGIDVGAKYAIYGLMDRLAADGVGVVLISSELPELLGM
TDRIAVFHEGRITAVLETRQTSQEEILHHASGRSHA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory