Running PSORTb v3.0 on BPHYT_RS27195 (315 amino acids)
SeqID: BPHYT_RS27195 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Periplasmic [matched 132121: Periplasmic protein] SCL-BLASTe- Unknown [No matches against database] Signal- Non-Cytoplasmic [Signal peptide detected] Localization Scores: Periplasmic 9.76 Extracellular 0.11 CytoplasmicMembrane 0.06 OuterMembrane 0.06 Cytoplasmic 0.00 Final Prediction: Periplasmic 9.76 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
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>BPHYT_RS27195 MKKLSVLAAAAAMCAMFSAYAQAAGGEIAVIVKTANSNYWQNVQKGATAAMADAKGYTMT FQGPAAESAIADEVNMVENAVNRHVAGIVLAPSDPDALVPAMKKAWEAHIPVVLIDSTVS DAGKQYYQSFLSTDNTKAGELCAQAMIDRVGQTGKVAIMSYVPGAGSEIGRVGGFRKYIT AHSKLQVVGPFYSQSQMATALNQTTDVLSANPDLKGIFGANEPTAVGMGRALAQSGKSGK VIAIGFDGNQDLQGFVRDGTIQAIAVQSSYQMGYKGIQTLVNVIERKPVSKQVDTGVMMV EKQNLDSSEAKNVLY
Lawrence Berkeley National Laboratory