PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS27415 (432 amino acids)

SeqID: BPHYT_RS27415 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 116482: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS27415
MHPSPSTLTPARSKAAAVFRVTAGNFLEQFDFFLFGFYATQIANVFFPAASEFASLMMTF
AVFGAGFLMRPLGAIVLGAYIDDVGRRKGLIVTLSIMATGTILIAFVPGYATIGLAAPAL
VLIGRLLQGFSAGAELGGVSVYLAEMATPGRKGLFTSWQSASQQVAIVVAAALGFALNQS
LDAATIAAWGWRVPFFVGCMIVPFIFMLRRNLQETEEFKARQHRPNMKEVLRTLVENWTV
VIAGMMLVAMTTASFYLITVYAPTFGKTVLHLSTADSLLVTLCVAVSNFVWLPIGGALSD
RIGRRPLLVAMTLLAILTAYPALSFLAHAPSFVNMLLALLWLSFMYGIYNGAMVVALTEV
MPAQVRVAGFSLAYSLATAVFGGFTPAISTALIHMTGDKAAPGYWMSFAAACALLATFAL
YRRRAATLTPAH