PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS27780 (658 amino acids)

SeqID: BPHYT_RS27780 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS27780
MSTIDSASLQPAPRQIPAIEHTAISGMDAYRALVAEAETDHQAFWARLAREHLQWRRPFT
KILDDSNAPFYKWFEDGELNASYNCLDRNLAKGLADKTAIVFEADDGTVTRITYQALYHR
VCRLANALRARGVTRGDRVVIYMPMSIEGIAAMLACARIGAPHSVVFGGFSAKSLHERLV
NVGAVAVMTADEQVRGGKTLPLKAIVDEALAMGGTVAVKTVVVYRRTGGRIPWITQRDAW
LHELEHAQSDTCEPEWVGAEHPLFVLYTSGSTGAPKGVQHSTGGYLLWAAVTMKWTFDIK
PDDVFWCTADIGWITGHTYICYGPTAVGATQVIFEGVPTYPDAGRFWQMIERHKVSIFYT
APTAIRSLIKAADANEAVHPRSFDLSSLRILGTVGEPINPSAWTWYAQHVGGGRCPVLDT
FWQTETGGHMISPLPGVTPLVPGSCTLPMPGIDAAIVDETGHEVPNGHGGVLVIRKPWPS
MIRTIWGNPERFRHGYYPDDLGGKLYLAGDGAIRDRDTGYFTITGRIDDVLNVSGHRLGT
MEIESALSAHPSVAEAAVVGRPDETCGEAIVAFVVLKTARPSGPDAKRVADELRAWVGKE
IGPIAKPKDIRFGDAMPKTRSGKVVRRLLRSVAKGEAITQDTSSVENPTVISQFAHGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory