PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS27960 (367 amino acids)

SeqID: BPHYT_RS27960 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 266444: Lactose transport ATP-binding protein lacK]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS27960
MSTIVLANLHKRFDDFVAVRDTSLTIGAGRFVVLLGPSGCGKTTTLRMIAGLELPTSGQI
FIDGEDVTALRARQRDIAFVFQMFALYPHMTVRNNIAFPLKNEHVSRKEIAARVAAAAHM
LRIENILDRKTGGLSGGDRQRVALGRAIVRQPKAFLMDEPLGTLDADFRELMCLELRKLH
NALAATTVYVTHDQSEAMAMADDIVVMNKGELLQAGPPQEIYHFPATVFVGNFIGSPPMN
FLPVDGGVDAGQEEVHLHGAQISVPRCEAAAERVLLGIRPEHVTINQHGPLRGKVIADEY
LGSHQVLVVETALGVVRVRVGKDEGLPAGSPVGLSFRKERTLLYDAQSGRLLPGAARTVP
AQGEANG