PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS27970 (317 amino acids)

SeqID: BPHYT_RS27970 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3025090: Inner membrane ABC transporter permease protein ycjP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS27970
MRPTATQHSVVASSPRGKRFAAAVVITYALLATLPMVWIFLTSFKTQEDAIAYPPVVLFQ
PSMEGYVNLFTIRSRQTPEFIASLPPARTWYERDVRKRNMVIAGPSKVLPRFANSLVIGF
GSTFLAVFLGTLAAYAFSRFKVPLADDLLFFILSTRMMPPIAVAIPIYLMYRALGLSDSC
VGMIVLYTAVNVSLAVWLLKGFMDEIPREYEEAALVDGYTRLQAFVKVVLPQAITGIAAT
AIFCLIFAWNEYAFASLLTSGDAQTMPPFIPFIIGEGGQDWPAVAAATTLFVLPILIFTV
VLRKHLLRGITFGAVRK