PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS28015 (382 amino acids)

SeqID: BPHYT_RS28015 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595941: probable enoyl-CoA hydratase/isomerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS28015
MSALQSVAHDTSLEAEREILFRVVNRVAIITLNRPAALNALSHAMVRELAVLVEHCRTDD
GIVALVLKGAGAKGFCAGGDVREVQRLAKNNDSRWLAFFVDEYRLDYALHTFPKPVVALL
DGIAMGGGMGLGQGARLRIVTERSKIAMPETRIGFLPDVGATRFLSVMPAELELYVGLTG
ATLSGADALRLQLADLCVPAEWLASFEERLQRMPLEGDLMAALRGVFEPPCNIIPHAPLA
AFTQLILRHFDRRSSIDRMVATVRHDLLREPPREVKQWLQSTYDALTGHSPTMLYVTREA
LLRGRQMTLAECFRMELGIVKRVIEEGDFCEGVRAQLIDKDRKARWAPATLAEVRPERVR
HFLASPWKSDAHPLAALGAEQG