PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS28035 (563 amino acids)

SeqID: BPHYT_RS28035 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597498: probable non-ribosomal peptide synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS28035
MTAAKAFFDARDLLLRHRTDYDRAYREFAWPPLGEFNWALDYFDVIARDNDNPALWIVDD
PATDGLRLSYAQMSERSARMANFLRGVGVGRGDRLLLMLPNRVELWDVMLAAMKLGAIVL
PATTQLSADDVRDRVQIGGANFAVVDSAELAKFDALEAPLTRLSVGAPRDGWIDLAAAYD
ASPQFTPEGITLATDPMLLYFTSGTTSKPKLVEHTHQSYPVGHLSTMYWIGLQPNDIHWN
ISSPGWAKHAWSCFFAPWNAQACVFVFNFARFVPKDTLNALVRFNITTLCAPPTVWRMLV
QEHLSDYPVKLREIVGAGEPLNPEVIERVKHAWGITIRDGYGQTETTCQIGNSPGQPVVA
GSMGRPLPGYTIELIDADDQPVTEGEISLPLAQRPLGLMTGYANNAKATAQAMRNGFYRT
SDVALRRDDGYYVYVGRADDVFKSSDYRLSPFELESVLIEHEAIGEAAVVPSADALRLSV
PKAFVTVRQGYEAGPELARAVFAFSREKLAPYKRIRRLQFSELPKTISGKIRRVELRRRE
MEREAEPARLPDEYWEEDFPDLR